PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G045100.1
Common NameB456_007G045100, LOC105802134
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 219aa    MW: 24008.6 Da    PI: 9.7775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G045100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-204594255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f tae Aa a+++a+++++g
  Gorai.007G045100.1 45 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFATAEAAALAYDEAALRFKG 94
                        69*******.**********9...3.35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.51345102IPR001471AP2/ERF domain
PfamPF008471.9E-144594IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2245103IPR016177DNA-binding domain
CDDcd000187.82E-1945103No hitNo description
SMARTSM003805.5E-3845108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3345103IPR001471AP2/ERF domain
PRINTSPR003673.4E-114657IPR001471AP2/ERF domain
PRINTSPR003673.4E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVQALTHVIG NDNDNKNPLP GQLHHHNQYQ YQSQHQPQGN VRRIHYRGVR QRPWGKWAAE  60
IRDPNKAARV WLGTFATAEA AALAYDEAAL RFKGSKAKLN FPERVQRSSG SGYLTISHVV  120
ERAPPPLPPP HSQPTFPNIS DDQLLSGGSN GGEAVSRPAF TSQYPTILSS SSSSPTLTSK  180
LQQEDLGGFL LKNIGGSSPS SDPPKNKRQC YDYYYSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2645105263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489054.11e-162PREDICTED: ethylene-responsive transcription factor ERF114-like
RefseqXP_012489055.11e-162PREDICTED: ethylene-responsive transcription factor ERF114-like
RefseqXP_012489056.11e-162PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-46EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0D2T8W21e-162A0A0D2T8W2_G
STRINGVIT_17s0000g00200.t011e-46(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2431434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-31ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]